github.com/ranlib/varpipe4/TARGET

variant pipeline

This is the CDC TB profiler: GitHub - CDCgov/NCHHSTP-DTBE-Varpipe-WGS: This repository contains an analysis pipeline developed to characterize WGS output.

This also runs fastq QC, decontamination, and alignment QC.


This is a companion discussion topic for the original entry at github.com/ranlib/varpipe4/TARGET