github.com/richardslab/gtex-pipeline/AlleleFoldChange

Analysis pipelines for the GTEx Consortium and TOPMed

This repository contains analysis pipelines for:

  • RNA-seq alignment, quantification, and quality control
  • eQTL mapping and annotation
  • Allele-specific expression quantification
  • Generation of the collapsed annotation used for gene-level expression quantification

Pipeline components are available as docker images, and execu


This is a companion discussion topic for the original entry at github.com/richardslab/gtex-pipeline/AlleleFoldChange