Analysis pipelines for the GTEx Consortium and TOPMed
This repository contains analysis pipelines for:
- RNA-seq alignment, quantification, and quality control
- eQTL mapping and annotation
- Allele-specific expression quantification
- Generation of the collapsed annotation used for gene-level expression quantification
Pipeline components are available as docker images, and execu
This is a companion discussion topic for the original entry at github.com/richardslab/gtex-pipeline/GetGeneId