BROAD Best Practice Data Pre-processing Workflow 18.104.22.168 is used to prepare data for variant calling analysis.
It can be divided into two major segments: alignment to reference genome and data cleanup operations that correct technical biases .
A list of all inputs and parameters with corresponding descriptions can be found at the bottom of this page.
Common Use Cases
- BROAD Best Practice Data Pre-processing Workflow 22.214.171.124 is designed to operate on individual samples.
This is a companion discussion topic for the original entry at github.com/sevenbridges-openworkflows/Broad-Best-Practice-Data-pre-processing-CWL1.0-workflow-GATK-126.96.36.199/GATK_4_1_0_0_data_pre_processing_workflow