VCF to GDS workflow converts VCF or BCF files into Genomic Data Structure
(GDS) format. GDS files are required by all workflows utilizing the GENESIS or
SNPRelate R packages.
Filename requirements:
The input file names should follow the pattern chr.
For example: 1KG_phase3_subset_chr1.vcf.gz
Some of the tools inside the workflow infer the chromosome number from the
file by expecting this pattern of file name.
This is a companion discussion topic for the original entry at github.com/sevenbridges-openworkflows/uw-genesis-topmed-cwl/UW_GAC_GENESIS_VCF_to_GDS