VCF to GDS workflow converts VCF or BCF files into Genomic Data Structure (GDS) format. GDS files are required by all workflows utilizing the GENESIS or SNPRelate R packages.
Step 1 (VCF to GDS) converts VCF or BCF files (one per chromosome) into GDS files, with option to keep a subset of Format fields (by default only GT field). (BCF files may be used instead of VCF.)
Step 2 (Unique Variant IDs) ensures that each variant has a unique integer ID across the genome.
Step 3 (Chec
This is a companion discussion topic for the original entry at github.com/sevenbridges-openworkflows/VCF-to-GDS