A WDL workflow which aligns read overlaps via MiGMAP to find consensus heavy and light BCR chains.
Please search for this workflow on Dockstore for use on analytics platforms such as Terra. Alternatively use Cromwell or another WDL execution engine to run this workflow.
Pipeline and scripts designed by Dr. Samuel Kazer formerly of Shalek Lab. WDL wrapper and scripts written by James Gatter of Shalek Lab.
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This is a companion discussion topic for the original entry at github.com/ShalekLab/ampliconBCR