Github.com/shukwong/gwas-pipelines/meta_analysis

This is a GWAS pipeline that is intended to be run with biobank size data

The workflow is designed to be modular with a main workflow file that calls the preprocessing subworkflow and (optionally) the GWAS tools.
Currently it supports Bolt-LMM and SAIGE.

Inputs for the workflow

genotype files (required)

The pipeline requires both directly genotyped and im


This is a companion discussion topic for the original entry at github.com/shukwong/gwas-pipelines/meta_analysis