Given a set of single-sample VCF files, it counts how many times each variant is called in the set.
It reports this in the following format:
chrom start stop alts count_with_other_filters count_with_filter_pass
chr1 11021 11022 ('A',) 1 0
Build Docker
Build the Docker image using the following command after replacing [TAG] with your preferred tag.
docker build --platform linux/amd64 -t [TAG] .
Inputs
The following is an example input to the workflo
This is a companion discussion topic for the original entry at github.com/talkowski-lab/count_variant_occurrence/get-cohort-af