Long-Read Annotation
Pipeline for long-read callset annotation.
Pipeline Steps
- AnnotateSVAN.wdl.
- AnnotatePALMER.wdl.
- AnnotateL1MEAIDFilter.wdl.
- AnnotateVEPHail.wdl.
- AnnotateSVAnnotate.wdl.
- AnnotateAF.wdl.
Cohort
- [HGSVC3]: 65 samples.
- [HPRC2]: 231 samples.
- Overlapping: 5 samples (HG002, HG00733, HG02818, NA19036, NA19240).
- Miss
This is a companion discussion topic for the original entry at github.com/talkowski-lab/lr-annotation/PALMERToVcf