github.com/theiagen/public_health_bioinformatics/TheiaCoV_Augur_DistanceTree_PHB

Workflow for SC2 cluster investigations. TheiaCoV_Augur_DistanceTree is will generate a ML distance tree using select tasks incorporated in the ThieaCoV_Augur_Run workflow; output from the modified sarscov2_nextstrain workflow will also be used to infer SNP distances. The ML distance tree output can be visualized using the Auspice web application https://auspice.us/


This is a companion discussion topic for the original entry at github.com/theiagen/public_health_bioinformatics/TheiaCoV_Augur_DistanceTree_PHB