Unimodal Embeddings for SpatialFusion
These WDL workflows generate the unimodal embedding inputs used by SpatialFusion:
| Workflow | Modality | Output | Docker |
|---|---|---|---|
GenerateScgptEmbeddingsForSpatialFusion |
spatial transcriptomics | scGPT.parquet |
vanallenlab/scgpt-embeddings:workflow-0.1 |
GenerateNicheformerEmbeddingsForSpatialFusion |
spatial transcriptomics | nicheformer.parquet |
vanallenlab/nicheformer-embeddings:workflow-0.1 |
| `GenerateUniEmbe |
This is a companion discussion topic for the original entry at github.com/uhlerlab/spatialfusion/nicheformer-embeddings-for-spatialfusion