PRIMED file conversion workflows


This workflow uses plink2 to convert a file from binary PLINK format (bed/bim/fam) to VCF.


input description
bed_file plink bed file
bim_file plink bim file
fam_file plink fam file
fasta_file (optional) fasta file. If provided, plink2 attempts to assign ref and alt alleles according to the reference genome.
out_prefix (optional) prefix for outp

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