primed-genesis-gwas
Workflow for running GENESIS on PRIMED data
Data preparation
Genotype files
The workflow expects genotype data in VCF (gzipped or not). (BCF is currently not accepted but can be added; please submit an issue if you need this option.) The PRIMED data model specifies that genotype data should be in hg38 but this workflow does accept hg19 (see genome_build input). The vcf_files input is an array, so VCF files may be split by chromosome (this is most efficient as
This is a companion discussion topic for the original entry at github.com/UW-GAC/primed-genesis-gwas/primed_genesis_gwas