github.com/UW-GAC/primed-pgs-queries/map_pubmed_ids_to_pgs_catalog

primed-pgs-queries

This repository contains PRIMED queries of the PGS Catalog using the PGS Catalog API.

Mapping PubmedIDs to the PGS catalog

The map_pmids.py python script can be used to map a list of PubmedIDs to the PGS catalog.
The script requires a csv file containing a list of PubmedIDs (one per line).
The script will output a tsv file containing the PubmedIDs and the corresponding PGS PGP_IDs, PGS_IDs and PGS


This is a companion discussion topic for the original entry at github.com/UW-GAC/primed-pgs-queries/map_pubmed_ids_to_pgs_catalog