Core VG Giraffe mapping and DeepTrio calling workflow for maternal-paternal-child sample datasets. It takes as inputs reads in FASTQ and graphs containing the population-based haplotypes to genotype. The graphs files required include the XG, GCSA, GBWT, graph GBWT, Distance and Minimizer indexes. It outputs a VCF file and BAM file for the child along with optional RTG and vcf evaluation if the user provides benchmark truth-set VCFs.

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