Github.com/williamrowell/wdl-mock-workflow

Automatic Tools and Workflows
1

wdl-mock-workflow

Description

This is a mock workflow with similar input to sample_analysis.wdl for HiFi-Human-WGS-WDL. To explain why it’s so complicated, sample_analysis.wdl will need to be compatible with:

  • miniwdl and Cromwell
  • HPC
  • AWS, Azure, and GCP
  • SMRTLink

Inputs

Type Name Description Constraints
String sample_id Sample ID Alphanumeric, hyphen, and underscore
String sex Reported sample sex Limit to `[“MALE”
This is a companion discussion topic for the original entry at github.com/williamrowell/wdl-mock-workflow