QuagmiR is a python tool for mapping of miRNA sequences and detection and quantification of different isomiRs. For mapping, the tool searches for exact match in the conserved middle part of the miRNA sequence, and once the match is found it uses filtering based on other information to decide whether to discard the sequence or not. It uses FASTQ files with miRNA-Seq reads as input.

QuagmiR requires the following input files and parameters:

  • Input reads: MiRNA-Seq reads in FASTQ for

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