A Docker container for the uniform annotation as part of the meging process.
Usage:
# fetch CWL
$> dockstore cwl --entry quay.io/ljdursi/pcawg-merge-annotate:1.0.0 > Dockstore.cwl
# make a runtime JSON template and edit it (or use the content of sample_configs.json in this git repo)
$> dockstore convert cwl2json --cwl Dockstore.cwl > Dockstore.json
# run it locally with the Dockstore CLI
$> dockstore launch --entry quay.io/ljdursi/pcawg-merge-annotate:1.0.0 \
--json Dockstore.json
This is a companion discussion topic for the original entry at quay.io/ljdursi/pcawg-merge-annotate