PCAWG EMBL variant calling workflow is developed by European Molecular Biology Laboratory at Heidelberg
(EMBL, https://www.embl.de), it consists of software components calling structural
variants using uniformly aligned tumor / normal WGS sequences. The workflow has been dockerized and packaged
using CWL workflow language, the source code is available on GitHub at:

Run the workflow with your own data

Prepare compute environme

This is a companion discussion topic for the original entry at quay.io/pancancer/pcawg_delly_workflow