PCAWG Sanger variant calling workflow is developed by Wellcome Trust Sanger Institute
(http://www.sanger.ac.uk/), it consists of software components calling somatic substitutions,
indels and structural variants using uniformly aligned tumour / normal WGS sequences.
The workflow has been dockerized and packaged using CWL workflow language, the source code
is available on GitHub at: https://github.com/ICGC-TCGA-PanCancer/CGP-Somatic-Docker.

Run the workflow with your own data

Prepare comp

This is a companion discussion topic for the original entry at quay.io/pancancer/pcawg-sanger-cgp-workflow