This app was exported from precisionFDA (https://precision.fda.gov).
It was created by Marghoob Mohiyuddin, Roche Sequencing.
What’s this?
This app maps Illumina FASTQ reads to the human reference genome (hs37d5 or GRCh37), using BWA-MEM.
The mappings are then sorted, indexed and marked for duplicates using bamsormadup from biobambam2.
The sorted mappings are then processing using FreeBayes to generate a list of variants.
What can it be used for?
Run this app for variant-calling (s
This is a companion discussion topic for the original entry at registry.hub.docker.com/pfda2dockstore/freebayes/freebayes