This app was exported from precisionFDA (
It was created by Alan Zhu, precisionFDA.

GATK HaplotypeCaller w/ GRCh37 + hs37d5

This is an update of the GATK HaplotypeCaller PrecisionFDA app that supports input sequence alignment data aligned to either GRCh37 or hs37d5 (i.e. GRCh37 plus decoy sequences and EBV).

Offical documentation:

This is a companion discussion topic for the original entry at