This app was exported from precisionFDA (
It was created by Rachel Goldfeder, Stanford University.

Coverage of Key Genes

This pipeline calculates and plots the coverage of key genes for your input sample.

Expected Output:

This pipeline outputs a table and pdf with information about the number (and %) of bases per gene failing to meet the coverage minimums.

User inputs:

Relevant coverage thresholds

  • Minimum base quality
  • Minimum mapping q

This is a companion discussion topic for the original entry at