This app was exported from precisionFDA (https://precision.fda.gov).
It was created by Rachel Goldfeder, Stanford University.
Coverage of Key Genes
This pipeline calculates and plots the coverage of key genes for your input sample.
Expected Output:
This pipeline outputs a table and pdf with information about the number (and %) of bases per gene failing to meet the coverage minimums.
User inputs:
Relevant coverage thresholds
- Minimum base quality
- Minimum mapping q
This is a companion discussion topic for the original entry at registry.hub.docker.com/pfda2dockstore/key_gene_coverage/key_gene_coverage