This app was exported from precisionFDA (
It was created by Adam Halstead, Human & Molecular Genetics Center Medical College of Wisconsin.

SnpSift filter is one of the most useful SnpSift commands.

Using SnpSift filter you can filter VCF files using arbitrary expressions, for instance:

"(QUAL > 30) | (exists INDEL) | ( countHet() > 2 )". 

The actual expressions can be quite complex, so it allows for a lot of flexibility.

[Documentation: http://snpeff.sourc

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