Automatic Tools and Workflows


Topic Replies Activity
About the Automatic Tools and Workflows category 1 August 13, 2019
Github.com/broadinstitute/gatk/pathseq_pipeline 1 April 2, 2020
Github.com/broadinstitute/gatk/run_happy 1 April 2, 2020
Github.com/broadinstitute/gatk/cram2model 1 April 2, 2020
Github.com/broadinstitute/gatk/cram2filtered 1 April 2, 2020
Github.com/broadinstitute/gatk/mutect2_pon 1 April 2, 2020
Github.com/broadinstitute/gatk/mutect2 1 April 2, 2020
Github.com/broadinstitute/gatk/cnv_somatic_panel_workflow 1 April 1, 2020
Github.com/broadinstitute/gatk/cnv_somatic_pair_workflow 1 April 1, 2020
Github.com/xbrianh/xvcfmerge 1 March 26, 2020
github.com/hubmapconsortium/sc-atac-seq-pipeline/HuBMAP_scATAC-seq_Pipeline 1 March 26, 2020
Github.com/genome/qc-metric-aggregator 1 March 25, 2020
Github.com/brwnj/gtex-gcs-workaround 1 March 24, 2020
github.com/NatalieEO/gatk4-somatic-cnvs 1 March 23, 2020
Quay.io/pancancer/pcawg-consensus-caller 2 March 23, 2020
Registry.hub.docker.com/weischenfeldt/pcawg_sv_merge 2 March 23, 2020
Github.com/genome/dockstore-workflow-index-reference 1 March 20, 2020
Github.com/broadinstitute/gatk/cnv_germline_case_workflow 1 March 19, 2020
Github.com/broadinstitute/gatk/cnv_germline_cohort_workflow 1 March 19, 2020
Github.com/brwnj/somalier-wdl 1 March 18, 2020
Github.com/broadinstitute/viral-pipelines/assemble_denovo_with_deplete 1 March 18, 2020
Github.com/broadinstitute/viral-pipelines/multi_sample_assemble_kraken 1 March 18, 2020
Github.com/broadinstitute/viral-pipelines/align_and_plot 1 March 18, 2020
Github.com/broadinstitute/viral-pipelines/genbank 1 March 18, 2020
Github.com/broadinstitute/viral-pipelines/fetch_annotations 1 March 18, 2020
Github.com/broadinstitute/viral-pipelines/mafft 1 March 18, 2020
Github.com/broadinstitute/viral-pipelines/illumina_demux 1 March 18, 2020
Github.com/broadinstitute/viral-pipelines/fetch_sra_to_bam 1 March 18, 2020
Github.com/broadinstitute/viral-pipelines/classify_krakenuniq 1 March 18, 2020
Github.com/broadinstitute/viral-pipelines/assemble_refbased 1 March 18, 2020