Second workflow in repository not showing up in Dockstore

Dockstore
1

I created a repository with a single workflow (convert_build), set up the GitHub app, and successfully pushed it to Dockstore. I then added a second workflow to the repository (plink2_bed2vcf) and have made multiple commits, but that workflow is not appearing under my-workflows. I can see in the GitHub logs for the first workflow that the commits are being registered. How can I get additional workflows to show up?

2

Hi Stephanie,

Thanks for reaching out!

After looking at the dockstore.yml in the provided GitHub repo, there appears to be a minor typo in the YAML formatting. The top-level key workflows does not need to be duplicated for each new workflow added, as the values provided under the workflows key make up a list.

For example, the current YAML file contents are:

version: 1.2
workflows:
   - name: plink2_bed2vcf
     subclass: WDL
     primaryDescriptorPath: /plink2_bed2vcf.wdl
     testParameterFiles:
         - /plink2_bed2vcf.json
workflows:
   - name: convert_build
     subclass: WDL
     primaryDescriptorPath: /convert_build.wdl
     testParameterFiles:
         - /convert_build.json

Removing the duplicate workflows key on line 8 will result in a valid formatting, which looks like:

version: 1.2
workflows:
   - name: plink2_bed2vcf
     subclass: WDL
     primaryDescriptorPath: /plink2_bed2vcf.wdl
     testParameterFiles:
         - /plink2_bed2vcf.json
   - name: convert_build
     subclass: WDL
     primaryDescriptorPath: /convert_build.wdl
     testParameterFiles:
         - /convert_build.json

Let me know if there are any other questions or clarifications I can help with!

Richard

3

Thank you! It’s working now.