ABOUT
This pipeline analyses rDNA amplicon sequences from single or multiple spores of arbuscular mycorrhizal fungi (AMF) generated using PacBio sequencing. Built using the Snakemake workflow management system, it leverages Conda environments for reproducibility and ease of deployment.
SUMMARY
The workflow has five main steps:
- Primer removal, quality filtering and size sele
This is a companion discussion topic for the original entry at github.com/AAFC-Bioinfo-AAC/AMF-rDNA-PacBio-amplicon-sequence-analysis-pipeline/AMF-rDNA-PacBio-amplicon-sequence-analysis-pipeline