fetch_reads_from_sra
Fetch a single SRA/ENA/DDBJ run and get back ready-to-use, gzip-compressed FASTQ — plus a
record of what was actually extracted, so a mixed batch of accessions (some Illumina PE,
some ONT SE) doesn’t need to be sorted out by hand afterward.
Terra usage
This workflow is built around Terra’s row-level scatter, not an Array input, because that
is the pattern it’s actually run with: point accession at this.SRA_ID in a data table,
select every row you want fetched,
This is a companion discussion topic for the original entry at github.com/alex-omics/microbial-genomics-wdl/fetch_reads_from_sra