clockwork-wdl
A partial WDLization of clockwork, focusing on functions used by this walkthrough. Supports (and sometimes requires) tarball inputs – please make sure to read the inputs section.
To allow for quicker runs, several workflows have “bluepeter” options. Named after the TV show coining the term “here’s one I made earlier,” these are files you can insert when ru
This is a companion discussion topic for the original entry at github.com/aofarrel/clockwork-wdl/Decontam_And_Combine_One_Samples_Fastqs