Github.com/aofarrel/myco/myco_simple

myco_simple

myco_simple is the version of myco to use if you already have a bunch of fastqs, divided on a per-sample basis, individually gzipped, and at least one of these is true:

  • your fastqs are already decontaminated and cleaned
  • you do not care about decontaminating/cleaning your fastqs
  • you want to run a very basic version of myco as a test
  • you want to compare the final output of a different version of myco versus what you would get without decontamination/fastp cleaning

By "indivi


This is a companion discussion topic for the original entry at github.com/aofarrel/myco/myco_simple