pull_FASTQs_from_SRA_by_biosample
This workflow is identical to pull_FASTQs_from_SRA_by_biosample except that this version takes in takes in an array of strings, while the other version takes in a textfile containing one string on every line.
Input a text file containing a list of BioSamples, get nested arrays of FQs for each BioSample.
Important notes
- Any accessions which are not paired Illumina FQs will be skipped. This is intentional.
- Relies on prefetch, which by default will t
This is a companion discussion topic for the original entry at github.com/aofarrel/SRANWRP/pull_FASTQs_from_SRA_by_biosample_nofile