tb_profiler WDL
Basic WDLization of TBProfiler. Features both bam-as-input mode and fastq-as-input mode. Extracts strain, drug resistance status, and median coverage into separate report files.
The Docker image is based upon staphb/tbprofiler but uses a reference genome with a different chromosome name. It’s the same NC_000962.3 you know and love.
Notes
- For the bam version of the pipeline, "_
This is a companion discussion topic for the original entry at github.com/aofarrel/tb_profiler/tbprofiler_bam