tb_profiler WDL

Basic WDLization of TBProfiler. Features both bam-as-input mode and fastq-as-input mode. Extracts strain, drug resistance status, and median coverage into separate report files.

The Docker image is based upon staphb/tbprofiler but uses a reference genome with a different chromosome name. It’s the same NC_000962.3 you know and love.


  • For the bam version of the pipeline, "_

This is a companion discussion topic for the original entry at