github.com/AoU-Multiomics-Analysis/ChromBPNet/chrombpnet-variant-scoring

Automatic Tools and Workflows
1

ChromBPNet variant scoring in Terra

workflows/score_variants.wdl scores predicted chromatin
effects for a variant list across cell-type models. The workflow uses WDL 1.0.
It runs one GPU task per model and merges the score files in a CPU task.

Inputs

  1. Supply a headerless TSV with these five columns, in this order:
    chr, pos, allele1, allele2, variant_id.
    Use 1-based positions, uppercase alleles, and unique variant IDs.
    allele1 mus
This is a companion discussion topic for the original entry at github.com/AoU-Multiomics-Analysis/ChromBPNet/chrombpnet-variant-scoring