prepare_QTL
Pipeline for preparing molecular phenotype and genotype data for QTL (Quantitative Trait Loci) analysis. Supports expression (eQTL), splicing (sQTL), and proteomics (pQTL) data types.
Repository Structure
prepare_QTL/
├── scripts/
│ ├── common/ # Shared phenotype-PC, covariate, and residualization utilities
│ ├── cell_type_specific_expression/ # Whole-blood deconvolution and TCA utilities
│ ├── expression/ # eQTL phenotype preparation
│ ├── methylation/ # PacB
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<small>This is a companion discussion topic for the original entry at <a href='https://dockstore.org/workflows/github.com/AoU-Multiomics-Analysis/prepare_QTL/prepare_cell_type_eQTL'>github.com/AoU-Multiomics-Analysis/prepare_QTL/prepare_cell_type_eQTL</a></small>