github.com/AoU-Multiomics-Analysis/susieR/ComputeR2Susie

Automatic Tools and Workflows
1

susieR WDL

Overview:

This WDL is designed to run on terra with the use of data tables.The inputs are the following:

  1. GenotypeDosages file: This can be generated from a vcf using bcftools dose
  2. GenotypeDosageIndex: Tabix .tbi file for the dosage file
  3. TensorQTLPermutations: Permutation P-values output from tensorQTL
  4. PhenotypeBed: File corresponding to the gene to be fine mapped
  5. CisDistance: integer that determines the window to be added to either side of the TSS
This is a companion discussion topic for the original entry at github.com/AoU-Multiomics-Analysis/susieR/ComputeR2Susie