susieR WDL
Overview:
This WDL is designed to run on terra with the use of data tables.The inputs are the following:
GenotypeDosages
file: This can be generated from a vcf usingbcftools dose
GenotypeDosageIndex
: Tabix.tbi
file for the dosage fileTensorQTLPermutations
: Permutation P-values output from tensorQTLPhenotypeBed
: File corresponding to the gene to be fine mappedCisDistance
: integer that determines the window to be added to either side of the TSS
This is a companion discussion topic for the original entry at github.com/AoU-Multiomics-Analysis/susieR