Oxford nanopore tools
Installing dependencies
- Install Homebrew
- Install cromwell
brew install cromwell
- Install Docker
Benchmarking DNA modification calling
Tools tested:
| Tool | 5mC (CpG) | 5mC (GpC) | 6mA | Notes |
|---|---|---|---|---|
| Nanopolish | X | X |
This is a companion discussion topic for the original entry at github.com/aryeelab/nanopore-tools/bamtobedwithcoverage