topology-tools
Setup
Install cromwell
On Macs Cromwell can be installed with
brew install cromwell
Otherwise you can download the Cromwell Jar from the releases page.
Set up Google Cloud Tools for access to docker images:
First download and install the Google Cloud CLI: Quickstart: Install the Google Cloud CLI | Google Cloud CLI Documentation
Then authenticate with Google for access to the docker image registry
gcloud auth login
gcloud
This is a companion discussion topic for the original entry at github.com/aryeelab/topology-tools/preprocess_rcmc