github.com/Breast-Oncology-Computational-Group/public-workflows/GEX_CNV_InferCNV

Automatic Tools and Workflows
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InferCNV Workflow

Overview

The infercnv.wdl workflow performs Copy Number Variation (CNV) inference on single-cell RNA sequencing data using the InferCNV algorithm. This workflow processes gene expression data in H5AD format and generates CNV analysis outputs from InferCNV.

Workflow Description

The workflow consists of two main steps:

  1. Data Conversion: Converts H5AD format gene expression data to RDS format using the h5ad_to_rds utility from the utils module
  2. **CNV Analy
This is a companion discussion topic for the original entry at github.com/Breast-Oncology-Computational-Group/public-workflows/GEX_CNV_InferCNV