GATK-SV
A structural variation discovery pipeline for Illumina short-read whole-genome sequencing (WGS) data.
For technical documentation on GATK-SV, including how to run the pipeline, please refer to our website.
Repository structure
/carrot: Carrot tests/dockerfiles: Resources for building pipeline docker images/inputs: files for generating workflow inputs/templates: Input json
This is a companion discussion topic for the original entry at github.com/broadinstitute/gatk-sv/CombineVcfsForMakeGq