A workflow that performs joint calling on single-sample gVCFs from GATK4 HaplotypeCaller using GenomicsDB. This Workflow relies on previously constructed genomicsDB instances to provide population-scale context for joint calling. NOTE: Currently assumes the interval list consists of only whole contigs.
This is a companion discussion topic for the original entry at github.com/broadinstitute/long-read-pipelines/SRJointCallGVCFsWithGenomicsDBPopulationScale