WDL Input Overview
This WDL updates all files and one column with an updated value within a dataset. The updated value comes from a Terra workspace outside the dataset. It will only rename files that are named {column_to_update}.{extension} to {column_with_new_value.extension}. To run this the dataset needs to have a primary key and the column to update cannot be the primary key.
There is some prep needed before the WDL can be run.
Prep before running WDL
- Create a snapshot of the
This is a companion discussion topic for the original entry at github.com/broadinstitute/ops-terra-utils/RenameColumnsAndFilesInDataset