github.com/broadinstitute/PTA_Analysis

Automatic Tools and Workflows
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Here’s a README.md draft for your GitHub repository that describes the analysis pipeline for PTA and WGS data:

PTA-WGS Analysis Pipeline

This repository contains a workflow description and tools for analyzing Primary Template-directed Amplification (PTA) and Whole Genome Sequencing (WGS) data. The pipeline includes all steps necessary for high-quality variant detection, including mapping, duplicate marking, realignment, variant calling, and filtration.

Overview

This

This is a companion discussion topic for the original entry at github.com/broadinstitute/PTA_Analysis