preprocessing and assembly workflows for Illumina MiSeq data
The IlluminaPreprocessAssembly.wdl workflow was developed for the preprocessing and assembly of Illumina MiSeq sequencing of SARS-CoV-2 to be run on the GCP Terra platform. It takes paired-end fastq files as input.
The columns for the input data table in Terra should be arranged as:
- entity:sample_id (column of sample names/ids). If there is more than one data tabl
This is a companion discussion topic for the original entry at github.com/CDPHE/illumina-preprocess-assembly