rmats-turbo-nf
Portable rMATS-turbo nextflow pipeline for RNA-seq data.
Pull docker image from docker hub as singularity sif files
cd ${HOME}/sif
singularity pull docker://chunjiesamliu/rmats-turbo-nf:latest
Configure customised Nextflow config file
# ccle test data, test-ccle.config
params {
projectName = "ccle_test"
sras = "test-ccle-10.tsv"
singleEnd = false
readLength = 101
ngcFile = false
starIndex = "path/to/star/index"
gtf = "path/to/gtf"
outdir =
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<small>This is a companion discussion topic for the original entry at <a href='https://dockstore.org/workflows/github.com/chunjie-sam-liu/rmats-turbo-nf'>github.com/chunjie-sam-liu/rmats-turbo-nf</a></small>