GATK-SV
A structural variation discovery pipeline for Illumina short-read whole-genome sequencing (WGS) data.
For technical documentation on GATK-SV, including how to run the pipeline, please refer to our website.
Repository structure
/carrot
: Carrot tests/dockerfiles
: Resources for building pipeline docker images/inputs
: files for generating workflow inputs/templates
: Input json file templates/values
: Input values u
This is a companion discussion topic for the original entry at github.com/CuriousTim/gatk-sv/RescueMobileElementDeletions