A bcftools extension to call mosaic chromosomal alterations starting from phased VCF files with either B Allele Frequency (BAF) and Log R Ratio (LRR) or allelic depth (AD). If you use this tool in your publication, please cite the following paper and preprint:

Loh P., Genovese G., McCarroll S., Price A. et al. Insights about clonal expansions from 8,342 mosaic
chromosomal a
<small>This is a companion discussion topic for the original entry at <a href=''></a></small>