Mitoscope
Mitoscope is a long-read specific mitochondrial analysis workflow to assembly mtDNA, perform heteroplasmic variant calling (of SNVs, indels, and SVs), and characterize non-reference NUMTs. It is built as a fully containerized Nextflow workflow using Singularity images and can be run on either ONT or PacBio data. Raw sequencing data or aligned reads are both accepted as input.
**mitoScope is currently in active development. Open an [issue](https://github.com/czakarian/mitoscope/issu
This is a companion discussion topic for the original entry at github.com/czakarian/mitoscope